PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019851001
Common NameGSBRNA2T00019851001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 235aa    MW: 26028.4 Da    PI: 10.0859
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019851001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.39.5e-32146202158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RR++Rakle+++kl +ksrkpylheSRh hAl+R+RgsgGrF
  GSBRNA2T00019851001 146 NEPIFVNAKQYHAILRRRKHRAKLEARNKL-IKSRKPYLHESRHLHALKRARGSGGRF 202
                          59****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-36144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.805145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.0E-27147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-23148170IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-23179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQVFQRKDSM PTNPNIQGSQ SFSLTKDMMM MSTQSGLQLQ DQDSSSTQST GESGGGCEVA  60
SFVECYMENQ GKGIESYTTT SSMVSQDSVF PPASGLASWP PQCPETPHFS SFLAPEYASQ  120
PKALSRLEMM GLVSSRVPLP HNIQENEPIF VNAKQYHAIL RRRKHRAKLE ARNKLIKSRK  180
PYLHESRHLH ALKRARGSGG RFLNTKKLQD SSNTPFRFSG YPSTHHVSAL MSGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20146206262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.190485e-85seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3869571e-118AF386957.1 Arabidopsis thaliana Unknown protein (F15I1.26) mRNA, complete cds.
GenBankAY0814451e-118AY081445.1 Arabidopsis thaliana unknown protein (At1g54160) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622821.11e-170PREDICTED: nuclear transcription factor Y subunit A-5-like
SwissprotQ9SYH41e-119NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBLA0A078J0R81e-176A0A078J0R8_BRANA; BnaCnng30790D protein
STRINGAT1G54160.11e-116(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116331733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-103nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]